Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs141487126 chr14:73420329 G/A 1.47E-6 365 20.6 13.03 8.73 KM Plot
LIHC rs141505252 chr2:37240189 AAAC/A 2.79E-5 367 20.27 14.9 8.73 KM Plot
LIHC rs141859654 chr3:7937252 T/G 1.87E-7 368 19.13 24.43 3.03 KM Plot
LIHC rs1427452 chr2:49652915 A/T 0 361 19.5 20.13 0.75 KM Plot
LIHC rs143635170 chr11:73561410 G/GCTCACAGATCATC 3.31E-6 368 19.5 20.48 1.87 KM Plot
LIHC rs143754324 chr11:107177732 T/TA 3.78E-6 361 19.83 18.78 1.87 KM Plot
LIHC rs144156762 chr14:56018069 A/AAAACTC 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs145041015 chr5:147042833 G/A 1.84E-5 365 20.05 16.2 4.25 KM Plot
LIHC rs145062782 chr13:108910836 C/T 4.19E-5 361 20.5 18.48 6.8 KM Plot
LIHC rs145872928 chr5:126174870 A/ATATT 8.98E-6 359 19.95 12.67 2.23 KM Plot
LIHC rs145942955 chr14:73442614 T/TTGA 3.73E-6 368 20.5 13.03 8.73 KM Plot
LIHC rs146274608 chr5:145522674 T/TTATATA 1.65E-5 364 19.6 20.9 13.43 KM Plot
LIHC rs146623304 chr5:126172807 TGAACTG/T 3.42E-5 364 19.83 12.17 2.23 KM Plot
LIHC rs146905904 chr5:126168319 AG/A 3.42E-5 364 19.83 12.17 2.23 KM Plot
LIHC rs147174766 chr2:37110443 CA/C 9.47E-6 366 20.45 12.17 8.73 KM Plot